Tools · Cheminformatics & Structure
Stereoisomer Enumerator
Expand unassigned stereocenters and E/Z double bonds into explicit stereoisomers with a parent-to-isomer audit
Hardware and price
Price per run
What a typical run reserves from your wallet: the catalog's expected runtime on each piece of hardware × your plan's per-second rate. Larger inputs reserve more, and you're charged only for the seconds the job actually runs.
| Hardware | Typical runtime | Basic | Starter | Pro | Enterprise |
|---|---|---|---|---|---|
| CPUDefault | 5 min | $0.042 | $0.024 | $0.015 | $0.009 |
In workflows
Chain it with other steps.
Each input and output has a data kind, so the builder only connects steps that fit.
Inputs
- Molecules (list)SMILES, SDF, MOLBLOCK, INCHI
Outputs
- ArchiveZIP
- TableCSV
- MoleculesSMILES
References
The method behind it.
- Greg Landrum, Paolo Tosco, Ricardo Rodriguez et al. (2026). RDKit: Open-source cheminformatics. Zenodo. doi:10.5281/zenodo.591637 (opens in a new tab)
- Robert M. Hanson, Sophia Musacchio, John W. Mayfield et al. (2018). Algorithmic Analysis of Cahn–Ingold–Prelog Rules of Stereochemistry: Proposals for Revised Rules and a Guide for Machine Implementation. Journal of Chemical Information and Modeling. doi:10.1021/acs.jcim.8b00324 (opens in a new tab)
Run via API
Submit it from your own code.
Use an API key from your account. The estimate uses your plan's rates; submitting reserves that amount from your wallet.
# Estimate the reservation for your plan (payload fields: see the API reference)
curl -X POST https://api.cognichem.com/api/v1/jobs/estimate \
-H "X-Api-Key: $COGNICHEM_API_KEY" \
-H "Content-Type: application/json" \
-d '{"job_type": "stereoisomer-enumerate", "resource": "cpu", "payload": {}}'
# Submit (retrying with the same Idempotency-Key never submits twice)
curl -X POST https://api.cognichem.com/api/v1/jobs/submit \
-H "X-Api-Key: $COGNICHEM_API_KEY" \
-H "Idempotency-Key: $(uuidgen)" \
-H "Content-Type: application/json" \
-d '{"job_name": "stereoisomer-enumerate-1", "job_type": "stereoisomer-enumerate", "resource": "cpu", "payload": { ... }}'Cheminformatics & Structure
Related tools
- Fingerprint Similarity & Clustering
Tanimoto nearest neighbors, Butina clustering, MaxMin diversity, and Scanpy PCA/UMAP/Leiden clustering from molecular fingerprints
- 3D Shape Similarity
3D shape and pharmacophore virtual screening: rank libraries against a query conformer with USRCAT and Gaussian shape + color overlay to find scaffold hops
- Image to Structure (OCSR)
Read chemical structures and reaction schemes from images of papers, slides and whiteboards as SMILES, with each reading checked by a second model
- ChEMBL Target Activities
Pull measured IC50, Ki, Kd and EC50 values for your targets from ChEMBL into one table, ready to curate and train on
- Bioactivity Dataset Curator & Splitter
Normalize assay units, censoring, and replicates into SAR/QSAR datasets with scaffold, random, or time splits
- Free Wilson Analysis
Quantify R-group SAR contributions and predict unsynthesized molecules from activity data